See our Image Analysis training material page for QuPath training links.Īrivis - commercial, we have one license in the CellObservatory unit, can be booked through internal services. QuPath - open source software for Quantitative digital Pathology - We recommend using QuPath. There are several image analysis software packages that can open directly 3D Histech files which are either You need to export the data to another format (eg tiff) in order to open it in Fiji, Imaris, etc. This format is NOT supported by Bio-Format, so the images cannot be opened directly in ImageJ/Fiji. If you open the mrxs file on its own - you'll get just the low resolution image. In software packages you open mrxs file, but you need all the files to be in place. mrxs file include the metadata including the information on how the. dat files are like small pieces of the image
The 3D Histech digital scanner saves the data in the MIRAX format which include:
If you need help with further analysis and quantification of the data please approach us.
This page deals with viewing and exporting MIRAX files.
